BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005A08SP1|AL425314
(725 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1405 0.0
>3x_Contig1718
Length = 19496
Score = 1405 bits (707), Expect = 0.0
Identities = 719/723 (99%), Gaps = 1/723 (0%)
Strand = Plus / Minus
Query: 3 gtgggacgacacaactatgaaacaatgcaccagacttttttcgcagttggatgttataat 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 10846 gtgggacgacacaactatgaaacaatgcaccagacttttttcgcagttggatgtta-aat 10788
Query: 63 ccttggtgatgaatactaaggtaacatcaaaggaacaaatagtgaaccatgacaggcaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10787 ccttggtgatgaatactaaggtaacatcaaaggaacaaatagtgaaccatgacaggcaga 10728
Query: 123 acaccgaaatcagaaagaataggcacgcaaagaggcgagacccagacaaggtgaaaacaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10727 acaccgaaatcagaaagaataggcacgcaaagaggcgagacccagacaaggtgaaaacaa 10668
Query: 183 ttataaatgatttatatcaaaaacttaataaggaatatgcgcctctaaaagcttcagatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10667 ttataaatgatttatatcaaaaacttaataaggaatatgcgcctctaaaagcttcagatt 10608
Query: 243 tatcacaagtcaattttttcttcaacaaggcaaaggttaagttcgaatggagtgctccta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10607 tatcacaagtcaattttttcttcaacaaggcaaaggttaagttcgaatggagtgctccta 10548
Query: 303 cattcaatgatgtaccaggtgaaaaggttaggcgcttgatggaaaaaaggcagcaagcaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10547 cattcaatgatgtaccaggtgaaaaggttaggcgcttgatggaaaaaaggcagcaagcaa 10488
Query: 363 tacaaactataatggatgaagaaaatgaatttattgcatcaacaactttcaagaaaggtt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10487 tacaaactataatggatgaagaaaatgaatttattgcatcaacaactttcaagaaaggtt 10428
Query: 423 cgatgacgttacctgttgcgtctgaggatgtccctcagattaattctaataahatgtatc 482
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10427 cgatgacgttacctgttgcgtctgaggatgtccctcagattaattctaataaaatgtatc 10368
Query: 483 taggtaagacgggcgggattccattcgagttgatcaaccaactaccagaaatagcgtttt 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10367 aaggtaagacgggcgggattccattcgagttgatcaaccaactaccagaaatagcgtttt 10308
Query: 543 tgggaagatgtaattcagggaaatctactcttttaaacagtgtcactacggaggtgacaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10307 tgggaagatgtaattcagggaaatctactcttttaaacagtgtcactacggaggtgacaa 10248
Query: 603 gaaatagtttaaacgaatatgcaaatgcctccaaaaaggcaggttttacaaagaccatca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10247 gaaatagtttaaacgaatatgcaaatgcctccaaaaaggcaggttttacaaagaccatca 10188
Query: 663 attgtttcaatgtaggtgggaagtttcgcatcattgatactccagratatggtactaaag 722
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10187 attgtttcaatgtaggtgggaagtttcgcatcattgatactccaggatatggtactaaag 10128
Query: 723 gaa 725
|||
Sbjct: 10127 gaa 10125
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5937
Number of Sequences: 1807
Number of extensions: 5937
Number of successful extensions: 152
Number of sequences better than 1.0e-20: 1
length of query: 725
length of database: 10,358,551
effective HSP length: 16
effective length of query: 709
effective length of database: 10,329,639
effective search space: 7323714051
effective search space used: 7323714051
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)